MMseqs2

rush.mmseqs2.mmseqs2(sequences, prefilter_mode=None, sensitivity=None, expand_eval=None, align_eval=None, diff=None, qsc=None, max_accept=None, run_spec=RunSpec(gpus=1), run_opts=RunOpts(), collect=False)

Parameters:

• sequences (list[str])

• prefilter_mode (Literal['KMer', 'Ungapped', 'Exhaustive'] | None)

• sensitivity (float | None)

• expand_eval (float | None)

• align_eval (int | None)

• diff (int | None)

• qsc (float | None)

• max_accept (int | None)

• run_spec (RunSpec)

• run_opts (RunOpts)